QTL.gCIMapping (version 3.4)

ZhouF: To perform QTL mapping with Wen method

Description

To perform QTL mapping with Wen method

Usage

ZhouF(
  pheRaw = NULL,
  genRaw = NULL,
  mapRaw1 = NULL,
  WalkSpeed = NULL,
  CriLOD = NULL,
  dir = NULL
)

Arguments

pheRaw

phenotype matrix.

genRaw

genotype matrix.

mapRaw1

linkage map matrix.

WalkSpeed

Walk speed for Genome-wide Scanning.

CriLOD

Critical LOD scores for significant QTL.

dir

file path in your computer.

Value

a list

Examples

# NOT RUN {
data(F2data)
readraw<-Readdata(file=F2data,fileFormat="GCIM",
method="GCIM-QEI",filecov=NULL,
MCIMmap=NULL,MultiEnv=TRUE)
DoResult<-Dodata(fileFormat="GCIM",
Population="F2",method="GCIM-QEI",
Model="Random",readraw,MultiEnv=TRUE)
ZhouMatrices<-ZhouF(pheRaw=DoResult$pheRaw,
genRaw=DoResult$genRaw,
mapRaw1=DoResult$mapRaw1,
WalkSpeed=1,CriLOD=3,
dir=tempdir())
# }