Learn R Programming

⚠️There's a newer version (1.14) of this package.Take me there.

QTLRel (version 0.1)

Tools for mapping of quantitative traits of genetically related individuals

Description

This software provides tools for quantiative trait mapping in populations such as advanced intercross lines where relatedness among individuals should be accounted for. It can estimate background genetic variances, impute missing genotypes, simulate genotypes, perform a genome scan for putative quantitative trait loci (QTL), and plot mapping results.

Copy Link

Version

Install

install.packages('QTLRel')

Monthly Downloads

465

Version

0.1

License

GPL (>= 2)

Maintainer

Riyan Cheng

Last Published

December 24th, 2010

Functions in QTLRel (0.1)

misFct

A collection of other functions.
nullSim

Simulate null distribution
plotit

Plotting
qtlVar

QTL Variance
miscEx

Pedigree, genotype data and genetic map.
genoImpute

Impute Genotypic Data
scanOne

Genome Scan
lodci

Estimate LOD Support Intervals
estVC

Estimate Genetic Variance Component Parameters
pedRecode

Recode a Pedigree
blup

Best Linear Unbiased Prediction
qqPlot

Quantile-Quantile Plots
hapSim

Generate Genotypic Data
aicVC

AIC Model Selection
scanOne4p

Genome Scan
genoProb

Probability of a Genotype.
genoSim

Generate Genotypic Data
mAIC

Multiple QTL AIC