get_R_theta

This function calculates R and theta values from a cleaned summary file. 
It optionally performs standard normalization by plate and markers.

Provides functions for estimating ploidy levels and detecting aneuploidy in individuals using
allele intensities or allele count data from high-throughput genotyping platforms, including
single nucleotide polymorphism (SNP) arrays and sequencing-based technologies. Implements an extended version of the 'PennCNV'
signal standardization method by Wang et al. (2007) <doi:10.1101/gr.6861907> for higher ploidy
levels. Computes B-allele frequencies (BAF), z-scores, and identifies copy number variation patterns.

Cristiane Taniguti

Qploidy

Estimation of Ploidy and Detection of Aneuploidy Using
Genotyping Data

Jeekin Lau

David Byrne

Oscar Riera-Lizarazu

get_R_theta function

<dl><dt>cleaned_summary</dt>
<dd>A summary object from the clean_summary function.</dd>
<dt>atan</dt>
<dd>Logical. If TRUE, calculates theta using atan2.</dd></dl>

Arguments

Get R and Theta Values from Summary File — get_R_theta

<dl>

<dt>cleaned_summary</dt>
<dd>A summary object from the clean_summary function.</dd>


<dt>atan</dt>
<dd>Logical. If TRUE, calculates theta using atan2.</dd>

</dl>

get_R_theta: Get R and Theta Values from Summary File

Description

Usage

Value

Arguments