get_aneuploids

Provides functions for estimating ploidy levels and detecting aneuploidy in individuals using
allele intensities or allele count data from high-throughput genotyping platforms, including
single nucleotide polymorphism (SNP) arrays and sequencing-based technologies. Implements an extended version of the 'PennCNV'
signal standardization method by Wang et al. (2007) <doi:10.1101/gr.6861907> for higher ploidy
levels. Computes B-allele frequencies (BAF), z-scores, and identifies copy number variation patterns.

Cristiane Taniguti

Qploidy

Estimation of Ploidy and Detection of Aneuploidy Using
Genotyping Data

Jeekin Lau

David Byrne

Oscar Riera-Lizarazu

get_aneuploids function

<dl><dt>ploidy_df</dt>
<dd>ploidy table (chromosome in columns and individuals in rows)</dd></dl>

Arguments

indexes for aneuploids — get_aneuploids

<dl>

<dt>ploidy_df</dt>
<dd>ploidy table (chromosome in columns and individuals in rows)</dd>

</dl>

get_aneuploids: indexes for aneuploids

Description

Usage

Value

Arguments