get_baf_par

Provides functions for estimating ploidy levels and detecting aneuploidy in individuals using
allele intensities or allele count data from high-throughput genotyping platforms, including
single nucleotide polymorphism (SNP) arrays and sequencing-based technologies. Implements an extended version of the 'PennCNV'
signal standardization method by Wang et al. (2007) <doi:10.1101/gr.6861907> for higher ploidy
levels. Computes B-allele frequencies (BAF), z-scores, and identifies copy number variation patterns.

Cristiane Taniguti

Qploidy

Estimation of Ploidy and Detection of Aneuploidy Using
Genotyping Data

Jeekin Lau

David Byrne

Oscar Riera-Lizarazu

get_baf_par function

<dl><dt>par_all_item</dt>
<dd>list containing R and theta matrices, and clusters models</dd>
<dt>ploidy</dt>
<dd>integer defining ploidy</dd></dl>

Arguments

To create baf in parallel — get_baf_par

<dl>

<dt>par_all_item</dt>
<dd>list containing R and theta matrices, and clusters models</dd>


<dt>ploidy</dt>
<dd>integer defining ploidy</dd>

</dl>

get_baf_par: To create baf in parallel

Description

Usage

Value

Arguments