merge_arms_format

Merges chromosome-arm level analysis results into chromosome level format

Provides functions for estimating ploidy levels and detecting aneuploidy in individuals using
allele intensities or allele count data from high-throughput genotyping platforms, including
single nucleotide polymorphism (SNP) arrays and sequencing-based technologies. Implements an extended version of the 'PennCNV'
signal standardization method by Wang et al. (2007) <doi:10.1101/gr.6861907> for higher ploidy
levels. Computes B-allele frequencies (BAF), z-scores, and identifies copy number variation patterns.

Cristiane Taniguti

Qploidy

Estimation of Ploidy and Detection of Aneuploidy Using
Genotyping Data

Jeekin Lau

David Byrne

Oscar Riera-Lizarazu

merge_arms_format function

<dl><dt>x</dt>
<dd>object of class qploidy_area_ploidy_estimation</dd>
<dt>filter_diff</dt>
<dd>filter by difference on area proportion between first and 
second place</dd></dl>

Arguments

Merges chromosome-arm level analysis results into chromosome level format — merge_arms_format

<dl>

<dt>x</dt>
<dd>object of class qploidy_area_ploidy_estimation</dd>


<dt>filter_diff</dt>
<dd>filter by difference on area proportion between first and 
second place</dd>

</dl>

merge_arms_format: Merges chromosome-arm level analysis results into chromosome level format

Description

Usage

Value

Arguments