read_illumina_array

This function reads Illumina array files and processes them into a format 
suitable for Qploidy analysis. It adds a suffix to sample IDs if multiple 
files are provided.

Provides functions for estimating ploidy levels and detecting aneuploidy in individuals using
allele intensities or allele count data from high-throughput genotyping platforms, including
single nucleotide polymorphism (SNP) arrays and sequencing-based technologies. Implements an extended version of the 'PennCNV'
signal standardization method by Wang et al. (2007) <doi:10.1101/gr.6861907> for higher ploidy
levels. Computes B-allele frequencies (BAF), z-scores, and identifies copy number variation patterns.

Cristiane Taniguti

Qploidy

Estimation of Ploidy and Detection of Aneuploidy Using
Genotyping Data

Jeekin Lau

David Byrne

Oscar Riera-Lizarazu

read_illumina_array function

<dl><dt>...</dt>
<dd>One or more Illumina array filenames.</dd></dl>

Arguments

Read Illumina Array Files — read_illumina_array

<dl>

<dt>...</dt>
<dd>One or more Illumina array filenames.</dd>

</dl>

read_illumina_array: Read Illumina Array Files

Description

Usage

Value

Arguments