Generates synthetic genotyping and signal intensity data for a given ploidy level. Returns a structured list containing input data suitable for standardization analysis.
simulate_standardization_input(
n_markers = 10,
n_samples = 5,
ploidy = 2,
seed = 2025
)A named list with:
Allelic signal intensities (X, Y, R, ratio).
Genotype dosage and probability data.
Genomic coordinates for each marker.
Merged input data with theta and genotype.
Integer. Number of markers to simulate (default: 10).
Integer. Number of individuals/samples to simulate (default: 5).
Integer. Ploidy level of the organism (e.g., 2 for diploid, 4 for tetraploid).
Integer. Random seed for reproducibility (default: 2025).