QuICSeedR (version 0.1.2)

CleanMeta: Get Clean Metadata

Description

This function processes raw data (raw), plate layout (plate), and replicate information (replicate) to create a clean metadata dataframe. It can optionally split the content column into additional columns.

Usage

CleanMeta(
  raw,
  plate,
  replicate,
  split_content = FALSE,
  split_by = "_",
  split_into = c(),
  del_na = TRUE
)

Value

A data frame containing the cleaned metadata.

Arguments

raw

A dataframe containing the raw data.

plate

A dataframe containing the plate layout information.

replicate

A dataframe containing the replicate information. Output of GetReplicate().

split_content

Logical, whether to split the content. Default is FALSE.

split_by

A character string to split the content by. Default is "_".

split_into

A character vector specifying names for the split columns. Required if split_content is TRUE.

del_na

Logical, whether to drop rows containing NA. Default is TRUE.

Examples

# Define the path to the plate data file
plate_path <- system.file("extdata/20240716_p3", 
                          file = '20240716_p3_plate.xlsx', 
                          package = "QuICSeedR")
  
# Read the plate data
plate <- readxl::read_xlsx(plate_path)

# Define the path to the raw data file
raw_path <- system.file("extdata/20240716_p3", 
                        file = '20240716_p3_raw.xlsx', 
                        package = "QuICSeedR")
# Read the raw data
raw <- readxl::read_xlsx(raw_path)

# Get replicate data
replicate <- GetReplicate(plate)

#Get metadata and display the few rows 
meta = CleanMeta(raw, plate, replicate)
head(meta)