QuICSeedR (version 0.1.2)

PlotPlate: Plot Time Series Data

Description

This function creates a faceted plot of time series data for each well in a plate layout.

Usage

PlotPlate(raw, plate_time, format = 96, f_size = 5, fill = FALSE)

Value

A ggplot object representing the plate data.

Arguments

raw

A data frame containing the raw plate data. The first row and first two columns are assumed to be metadata and are removed.

plate_time

Output from ConvertTime().

format

Format of plates used in the experiment. 96 or 384.

f_size

font size for subtitles.

fill

Logical, whether to fill in missing wells with 0. Default is FALSE.

Examples

# Define the path to the plate data file
plate_path <- system.file("extdata/20240716_p3", 
                          file = '20240716_p3_plate.xlsx', 
                          package = "QuICSeedR")
  
# Read the plate data
plate <- readxl::read_xlsx(plate_path)

# Define the path to the raw data file
raw_path <- system.file("extdata/20240716_p3", 
                        file = '20240716_p3_raw.xlsx', 
                        package = "QuICSeedR")
# Read the raw data
raw <- readxl::read_xlsx(raw_path)

# Ensure time displayed as decimal hours
plate_time = ConvertTime(raw)

#Plot time series data for each well in a plate layout
PlotPlate(raw = raw, plate_time = plate_time, fill = TRUE)