Compute_NMI

<p>output from QuantumClone clustering</p>

QC_out

<p>Compute the normalized mutual information to assess clustering quality</p>

Using HTS data, clusters mutations in order to recreate putative
clones from the data provided. It requires genotype at the location of the
variant as well as the depth of coverage and number of reads supporting the
mutation. Additional information may be provided, such as the contamination
in the tumor sample. This package also provides a function QuantumCat() which
simulates data obtained from tumor sequencing.

Paul Deveau

Compute_NMI: Normalized Mutual Information

Description

Usage

Arguments

Examples