One_D_plot

EM_out

<p>Numeric vector giving the proportion of normal cells in each samples</p>

contamination

<p>Creates density plot when only one sample is given</p>

inference

phylogeny

Clonal

Using HTS data, clusters mutations in order to recreate putative
clones from the data provided. It requires genotype at the location of the
variant as well as the depth of coverage and number of reads supporting the
mutation. Additional information may be provided, such as the contamination
in the tumor sample. This package also provides a function QuantumCat() which
simulates data obtained from tumor sequencing.

Paul Deveau

QuantumClone

Clustering Mutations using High Throughput Sequencing (HTS) Data

One_D_plot function

Plots — One_D_plot

Plots

One_D_plot: Plots

Description

Usage

Arguments