check_leaf

new_leaf

<p>Matrix with samples in columns, clones (carrying mutations) in rows.</p>

Proportions_mutated

<p>Checks that created leaf has cellularity &gt;1
existing clone in at least one sample, and that cellularities in all samples are greater than or equal to 0.</p>

Using HTS data, clusters mutations in order to recreate putative
clones from the data provided. It requires genotype at the location of the
variant as well as the depth of coverage and number of reads supporting the
mutation. Additional information may be provided, such as the contamination
in the tumor sample. This package also provides a function QuantumCat() which
simulates data obtained from tumor sequencing.

check_leaf: Check created leaf

Description

Usage

Arguments