create_priors

nclust

nsample

<p>Possible priors known (the position of each element in a list corresponds to 1 clone)</p>

prior

<p>Semi-random generation of clonal priors</p>

Using HTS data, clusters mutations in order to recreate putative
clones from the data provided. It requires genotype at the location of the
variant as well as the depth of coverage and number of reads supporting the
mutation. Additional information may be provided, such as the contamination
in the tumor sample. This package also provides a function QuantumCat() which
simulates data obtained from tumor sequencing.

create_priors: Clonal fraction prior creation

Description

Usage

Arguments