filter_on_fik

A list of dataframes (one for each sample), generated by the Patient_schrodinger_cellularities.

Schrod

matrix of probability of each possibility to belong to a clone

Keep one possibility per position and ajust weight accordingly

filter

Using HTS data, clusters mutations in order to recreate putative
clones from the data provided. It requires genotype at the location of the
variant as well as the depth of coverage and number of reads supporting the
mutation. Additional information may be provided, such as the contamination
in the tumor sample. This package also provides a function QuantumCat() which
simulates data obtained from tumor sequencing.

filter_on_fik: Data filter

Description

Usage

Arguments