find_x_position

The interaction matrix of the tree (1 on the i-th row j-th column means "clone j is the progeny of clone i")

matrix

Index of the clone of interest in the matrix

Computes the position of a node on the graph, based on the interaction matrix.

inference

phylogeny

Clonal

Using HTS data, clusters mutations in order to recreate putative
clones from the data provided. It requires genotype at the location of the
variant as well as the depth of coverage and number of reads supporting the
mutation. Additional information may be provided, such as the contamination
in the tumor sample. This package also provides a function QuantumCat() which
simulates data obtained from tumor sequencing.

find_x_position: Graphic position

Description

Usage

Arguments