is_included

Numeric vector, representing the cellularity of Clone1 in different samples

Clone1

Numeric vector, representing the cellularity of Clone2 in different samples

Clone2

Clone2 is included in Clone1 if all values of Clone2 are lower or equal to the ones in Clone1 at the same position. Returns TRUE is Clone2 is included in Clone1.

inference

phylogeny

Clonal

Using HTS data, clusters mutations in order to recreate putative
clones from the data provided. It requires genotype at the location of the
variant as well as the depth of coverage and number of reads supporting the
mutation. Additional information may be provided, such as the contamination
in the tumor sample. This package also provides a function QuantumCat() which
simulates data obtained from tumor sequencing.

is_included: Group theory

Description

Usage

Arguments