QuantumClone (version 1.0.0.6)

plot_QC_out: Plot QC_output

Description

This function was implemented to re-plot easily the diagrams of clonality for changes/enhancement. Returns a ggplot object Uses ggplot2 package

Usage

plot_QC_out(QClone_Output, Sample_names = NULL, simulated = FALSE,
  sample_selected = 1:2)

Arguments

QClone_Output

Output from QuantumClone algorithm

Sample_names

: character vector of the names of each sample (in the same order as the data)

simulated

Was the data generated by QuantumCat?

sample_selected

: number of the sample to be considered for plot (can be 1 or 2 samples)

Examples

# NOT RUN {
require(ggplot2)
message("Using preclustered data:")
QC_out<-QuantumClone::QC_output
plot_QC_out(QC_out,Sample_names = c("Diagnosis","Relapse"))

# }