.AllPairsTripletDist

internal

Calculates the number of four-taxon subtrees consistent with a pair
of cladograms, calculating the symmetric quartet distance of Bandelt & Dress
(1986), Reconstructing the shape of a tree from observed dissimilarity data,
Advances in Applied Mathematics <doi:10.1016/0196-8858(86)90038-2>,
using the tqDist algorithm of Sand et al. (2014), tqDist: a library for
computing the quartet and triplet distances between binary or general trees,
Bioinformatics <doi:10.1093/bioinformatics/btu157>
for pairs of binary trees; calculating the rooted triplet distance
using the CPDT algorithm of Jansson & Rajaby (2017), A more practical
algorithm for the rooted triplet distance, Journal of Computational Biology
<doi:10.1089/cmb.2016.0185>.

Martin R. Smith

Quartet

Comparison of Phylogenetic Trees Using Quartet and Split
Measures

Jesper Jansson

Ramesh Rajaby

Andreas Sand

Gerth Stølting Brodal

Rolf Fagerberg

Thomas Mailund

Christian N. S. Pedersen

Jens Johansen

Morten K. Holt

.AllPairsTripletDist function

All pairwise triplet distances — .AllPairsTripletDist

All pairwise triplet distances

.AllPairsTripletDist: All pairwise triplet distances

Description

Usage

Arguments