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QuasR (version 1.12.0)

Quantify and Annotate Short Reads in R

Description

This package provides a framework for the quantification and analysis of Short Reads. It covers a complete workflow starting from raw sequence reads, over creation of alignments and quality control plots, to the quantification of genomic regions of interest.

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Version

Version

1.12.0

License

GPL-2

Maintainer

Michael Stadler

Last Published

February 15th, 2017

Functions in QuasR (1.12.0)

qProject-class

qProject objects
qCount

Quantify alignments
qAlign

Align reads
alignmentStats

Get statistics on alignments
qMeth

Quantify DNA methylation
QuasR-package

Quantify and Annotate Short Reads in R
qQCReport

QuasR Quality Control Report
preprocessReads

Preprocess Short Reads
qProfile

Quantify alignments by relative position
qExportWig

QuasR wig file export