QurvE (version 1.1.1)

summary.drFitfl: Generic summary function for drFitfl objects

Description

Generic summary function for drFitfl objects

Usage

# S3 method for drFitfl
summary(object, ...)

Value

A dataframe with parameters for all samples extracted from a dose-response analysis.

Arguments

object

object of class drFitfl

...

Additional arguments. This has currently no effect and is only meant to fulfill the requirements of a generic function.

Examples

# load example dataset
input <- read_data(data.growth = system.file("lac_promoters_growth.txt", package = "QurvE"),
                   data.fl = system.file("lac_promoters_fluorescence.txt", package = "QurvE"),
                   csvsep = "\t",
                   csvsep.fl = "\t")

# Define fit controls
control <- fl.control(fit.opt = 's',
             x_type = 'time', norm_fl = TRUE,
             dr.parameter = 'max_slope.spline',
             dr.method = 'model',
             suppress.messages = TRUE)

# Run curve fitting workflow
res <- flFit(fl_data = input$norm.fluorescence,
             time = input$time,
             parallelize = FALSE,
             control = control)

# Perform dose-response analysis with biosensor model
drFitfl <- fl.drFit(flTable = res$flTable, control = control)

summary(drFitfl)