QurvE (version 1.1.1)

summary.flFitLinear: Generic summary function for flFitLinear objects

Description

Generic summary function for flFitLinear objects

Usage

# S3 method for flFitLinear
summary(object, ...)

Value

A dataframe with parameters extracted from a linear fit.

Arguments

object

object of class flFitLinear

...

Additional arguments. This has currently no effect and is only meant to fulfill the requirements of a generic function.

Examples

# load example dataset
input <- read_data(data.growth = system.file("lac_promoters_growth.txt", package = "QurvE"),
                   data.fl = system.file("lac_promoters_fluorescence.txt", package = "QurvE"),
                   csvsep = "\t",
                   csvsep.fl = "\t")

# Extract time and normalized fluorescence data for single sample
time <- input$time[4,]
data <- input$norm.fluorescence[4,-(1:3)] # Remove identifier columns

# Perform linear fit
TestFit <- flFitLinear(time = time,
                       fl_data = data,
                       ID = 'TestFit',
                       control = fl.control(fit.opt = 'l', x_type = 'time',
                       lin.R2 = 0.95, lin.RSD = 0.1,
                       lin.h = 20))

summary(TestFit)