plot.R0.S

Generates the graphical output for an object generated through
<code>sensitivity.analysis()</code>.

internal

Estimation of reproduction numbers for disease outbreak, based on
incidence data. The R0 package implements several documented methods. It is
therefore possible to compare estimations according to the methods used.
Depending on the methods requested by user, basic reproduction number
(commonly denoted as R0) or real-time reproduction number (referred to as
R(t)) is computed, along with a 95% Confidence Interval. Plotting outputs
will give different graphs depending on the methods requested : basic
reproductive number estimations will only show the epidemic curve
(collected data) and an adjusted model, whereas real-time methods will also
show the R(t) variations throughout the outbreak time period. Sensitivity
analysis tools are also provided, and allow for investigating effects of
varying Generation Time distribution or time window on estimates.

Thomas Obadia

Estimation of R0 and Real-Time Reproduction Number from
Epidemics

plot.R0.S function

<dl><dt>x</dt>
<dd>Output of <code>sensitivity.analysis()</code> (class <code>R0.S</code>)</dd>
<dt>what</dt>
<dd>Specify the desired output. Can be <code>"heatmap"</code> (default), <code>"criterion"</code> or both.</dd>
<dt>time.step</dt>
<dd>Optional. If date of first observation is specified, number of day between each incidence observation.</dd>
<dt>skip</dt>
<dd>Number of results to ignore (time period in days) when looking for highest Rsquared value.</dd>
<dt>...</dt>
<dd>Parameters passed to inner functions.</dd></dl>

Arguments

Author

Plot of sensitivity analyses. — plot.R0.S

<dl>

<dt>x</dt>
<dd>Output of <code>sensitivity.analysis()</code> (class <code>R0.S</code>)</dd>


<dt>what</dt>
<dd>Specify the desired output. Can be <code>"heatmap"</code> (default), <code>"criterion"</code> or both.</dd>


<dt>time.step</dt>
<dd>Optional. If date of first observation is specified, number of day between each incidence observation.</dd>


<dt>skip</dt>
<dd>Number of results to ignore (time period in days) when looking for highest Rsquared value.</dd>


<dt>...</dt>
<dd>Parameters passed to inner functions.</dd>

</dl>

plot.R0.S: Plot of sensitivity analyses.

Description

Usage

Value

Arguments

Author

Details