read.bugs

This function reads Markov Chain Monte Carlo output in the
 CODA format produced by OpenBUGS and returns an object of class
 <code>mcmc.list</code> for further output analysis using the
 coda package.

file

Using this package,
it is possible to call a BUGS model, summarize inferences and
convergence in a table and graph, and save the simulations in arrays for easy access
in R.

Uwe Ligges

R2OpenBUGS

Running OpenBUGS from R

Andrew Gelman

Sibylle Sturtz

Gregor Gorjanc

Jouni Kerman

Neal Thomas

read.bugs function

<dl> <dt>codafiles</dt>
<dd>character vector of filenames (e.g. returned from
 <code>bugs</code> in call such as <code>bugs(....., codaPkg=TRUE,
 .....)</code>). Each of the files contains coda output for one chain
 produced by OpenBUGS, the directory name of the corresponding
 file <code class="file">CODAindex.txt</code> is extracted from the first element of
 <code>codafiles</code>.</dd> <dt>...</dt>
<dd>further arguments to be passed to
 <code>read.coda</code></dd></dl>

Arguments

Read output files in CODA format — read.bugs

<dl>

 <dt>codafiles</dt>
<dd>character vector of filenames (e.g. returned from
 <code>bugs</code> in call such as <code>bugs(....., codaPkg=TRUE,
 .....)</code>). Each of the files contains coda output for one chain
 produced by OpenBUGS, the directory name of the corresponding
 file <code class="file">CODAindex.txt</code> is extracted from the first element of
 <code>codafiles</code>.</dd>

 <dt>...</dt>
<dd>further arguments to be passed to
 <code>read.coda</code></dd>

</dl>

read.bugs: Read output files in CODA format

Description

Usage

Arguments

See Also