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R2ucare (version 1.0.2)

Goodness-of-Fit Tests for Capture-Recapture Models

Description

Performs goodness-of-fit tests for capture-recapture models as described by Gimenez et al. (2018) . Also contains several functions to process capture-recapture data.

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Install

install.packages('R2ucare')

Monthly Downloads

249

Version

1.0.2

License

GPL (>= 2)

Issues

0

Pull Requests

0

Stars

6

Forks

5

Maintainer

Olivier Gimenez

Last Published

July 11th, 2022

Functions in R2ucare (1.0.2)

overall_JMV

Overall goodness-of-fit test for the Jolly-Move model
test3Gsm

Test3G.SM
pool2K

Pooling algorithm
test3Gsr

Test3G.SR
test2cl

Test2.CL
test2ct

Test2.CT
read_headed

Read capture-recapture data with Headed format used by program E-SURGE
testMltec

TestM.LTEC
gof_test

Goodness-of-fit test for contingency tables
overall_CJS

Overall goodness-of-fit test for the Cormack-Jolly-Seber model
ungroup_data

Ungroup encounter capture-recapture data in individual histories
multimarray

Multistate m-array
pooling_ct

Pooling algorithm (multisite goodness-of-fit tests)
reconstitution

Reformat outputs of multinomial mixture distributions parameters
read_inp

Read capture-recapture data with Input (.inp) format used by program MARK
repmat

Replicate and tile a matrix
pooling_mixtures

Pooling algorithm (multisite goodness-of-fit tests)
test3sr

Test3.SR
testMitec

TestM.ITEC
test3sm

Test3.SM
test3Gwbwa

Test3G.WBWA
expval_table

Expected values in a contingency table
ind_test_22

Test of independence for 2x2 contingency tables
group_data

Group individual capture-recapture data in encounter histories
ind_test_rc

Test of independence for rxc contingency tables
coef_mixtures

Estimation of multinomial mixture distributions parameters
group_data_gen

Group individual capture-recapture data in encounter histories along specific column(s)
deviance_mixture

Deviance of multinomial mixture distributions
inv_logit_gen

Inverse generalized logit link
marray

m-array: table of first recaptures