R3CPET-package:
3CPET: Finding Co-factor Complexes in Chia-PET experiment using a Hierarchical Dirichlet Process
Description
The main goal of 3CPET is to try to infer the set of protein networks that are likely to work together inorder to maintain chromatin loops obtained by a ChIA-PET experiment.
It is based on an idea silimar to the one used for document classification. It starts first by building a PPI network for each chromatin interaction, then uses an HDLA (Hierarchical Dirichlet Latent Allocation) model to infer the set of networks that are enriched together.Details
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Package: |
| R3CPET |
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Type: |
| Package |
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Version: |
| 1.0 |
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Date: |
| 2013-11-23 |
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License: |
| GPL (>= 3.0) |
References
M.N Djekidel et al,3CPET: Finding Co-factor Complexes in Chia-PET experiment using a Hierarchical Dirichlet Process, in press, 2015