R3CPET (version 1.4.2)

plotTrack-methods: Plot interaction on a genomic track

Description

This helper method can be used to display a genomic track for a certain location that contains the chromosome and the related interactions if any.

Usage

"plotTrack"(object, range)

Arguments

object

a ChiapetExperimentData object which contains the raw data.

range

The genomic coordinates of the location to display

Value

a ggbio::track object

See Also

ChiapetExperimentData

Examples

    petFile <- file.path(system.file("example",package="R3CPET"),"HepG2_interactions.txt")  
    tfbsFile <- file.path(system.file("example",package="R3CPET"),"HepG2_TF.txt.gz")  

    ## Not run: 
#     x <- ChiapetExperimentData(pet = petFile, tfbs=  tfbsFile, IsBed = FALSE, ppiType="HPRD", filter= TRUE) 
#     gr <- GRanges("chr1",IRanges(start=100000,end=300000))
#     plotTrack(x,gr)
# ## End(Not run)