baseQualityStats

baseQualityStats,QualityScaledDNAStringSet-method

baseQualityStats,ShortReadQ-method

baseQualityStats,SFFContainer-method

An object of class <a rd-options="" href="/link/QualityScaledDNAStringSet?package=R453Plus1Toolbox&version=1.22.0" data-mini-rdoc="R453Plus1Toolbox::QualityScaledDNAStringSet">QualityScaledDNAStringSet</a>, <a rd-options="" href="/link/ShortReadQ?package=R453Plus1Toolbox&version=1.22.0" data-mini-rdoc="R453Plus1Toolbox::ShortReadQ">ShortReadQ</a> or 
    <a rd-options="" href="/link/SFFContainer?package=R453Plus1Toolbox&version=1.22.0" data-mini-rdoc="R453Plus1Toolbox::SFFContainer">SFFContainer</a>.

object


  This function returns mean, minimum, maximum and standard deviation of the base quality scores 
  over all sequences.


methods

The R453Plus1 Toolbox comprises useful functions for the
analysis of data generated by Roche's 454 sequencing platform.
It adds functions for quality assurance as well as for
annotation and visualization of detected variants,
complementing the software tools shipped by Roche with their
product. Further, a pipeline for the detection of structural
variants is provided.

HansUlrich Klein

R453Plus1Toolbox

A package for importing and analyzing data from Roche's Genome
Sequencer System

baseQualityStats function

An object of class <a href="QualityScaledDNAStringSet" rd-options="">QualityScaledDNAStringSet</a>, <a href="ShortReadQ" rd-options="">ShortReadQ</a> or 
    <a href="SFFContainer" rd-options="">SFFContainer</a>.

This function returns mean, minimum, maximum and standard deviation of the base quality scores 
  over all sequences.

baseQualityStats: Statistics Of Base Quality

Description

Usage

Arguments

Value