RADami-package: Phylogenetic Analysis of RADseq Data
Description
This package implements import, export, manipulation, visualization, and downstream
(post-clustering) analysis of RADseq data, integrating with the pyRAD package by Deren Eaton.
It begins with output from the pyRAD package by Deren Eataon (http://dereneaton.com/software; Eaton and Ree, 2013) and
implements many analyses conducted in a recent phylogenetic analysis of oaks (Hipp et al., accepted).Details
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Package: |
| RADami |
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Type: |
| Package |
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Version: |
| 1.1-2 |
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Date: |
| 2017-02-10 |
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License: |
| GPL-3 |
References
Eaton D.A.R. & Ree R.H. (2013). Inferring Phylogeny and Introgression using RADseq Data: An Example from Flowering Plants (Pedicularis: Orobanchaceae). Systematic Biolology 62: 689-706. Hipp A.L., Eaton D.A.R., Cavender-Bares J., Fitzek E., Nipper R. & Manos P.S. 2014. A framework phylogeny of the American oak clade based on sequenced RAD data. PLoS ONE 9: e93975.
http://www.dereneaton.com/software/pyrad/