RADami (version 1.1-2)

pairwise.fst.loci: Returns pairwise FST list for groups of individuals

Description

for use with RADami

Usage

pairwise.fst.loci(dat, group.list, to.do,
                  minInds = 3, do.hist = FALSE,
                  cores = 1, ...)

Arguments

dat

an object of class subset.pyRAD.loci

group.list

named list of character vectors, indicating groups of individuals

to.do

which groups to generate pairwise data for

minInds

minimum numer of individuals allowed per locus

do.hist

boolean; whether a histogram of pairwise FST should be written to the working directory

cores

how many processing cores to use

…

additional parameters passed along to genotypes.pyRAD.loci

Value

A list with the following elements:

fst

pairwise fst list

groups

groups used in the analysis

genotypes

genotype data

sp.pairs

species pairs analyzed

snpLocs

location of SNPs

timestamp

when analysis was conducted

See Also

subset.pyRAD.loci