Create Rarefied OTU Tables
Summary Of Core OTUs
Split Column Of Data Frame
Match Samples In Ecology Data Sets and Metadata
Summary Of Core OTUs
Location Formatting
Data Input Formatting
Boxplot To Compare Diversity Indices Among Groups
Create a PCoA plot for an OTU Table
Sample Metadata for ITS1/ITS2
Barplot Of Distribution Of Taxa In Groups
Plot Hierarchical Cluster Of Metadata
Transform OTU Table
Calculate True Diversity and Evenness
Write Data To CSV File
Load Metadata Table
Boxplot Of Distribution Of Taxa In Each Level of A Metadata Variable
Validate And Reformat The OTU Taxonomy Column
Plot Hierarchical Taxonomic Tree
Plot the Abundance of OTUs by Classification at a Given Taxonomic Rank
Plot Intra And Inter Specific Variation For An Alignment
Validate an OTU Table
Plot Venn Diagram For Two To Five Sets With Item Labels
Plot The Geographic Location of Samples
Analysis of Amplicon-Based Metagenomic Data
Perform CCA and RDA Analysis for OTU Tables
Ordination Plot For Taxa Groups Using CCA or RDA Analysis
Creating Plots with RAM
Visualize The Negative Binomial Model OF A Given Taxon OR OTUID
Plot the Abundance of OTUs by Classification at a Given Taxonomic Rank
For Each Level of A Metadata Category Variable.
Sample Alignment
Plot the Top Taxon Groups
Aggregate OTU Data Based on Taxonomy
Filter Taxonomic Abundance Matrix by Total Counts Or
Maximum Relative Abundance
Plot the Abundance of OTUs by Classification at a Given Taxonomic Rank
Factor Formatting for RAM
Creat Color Palette
Ordination Plot For OTUs Using CCA or RDA Analysis
Plot Dissimilarity Matrix Data for Different Methods
Date Formatting for RAM
Barplot Of Richness For Each Level Of A Given Metadata Variable
Subset OTU And Metadata
Fast Load Large OTU Table
Transpose OTU Tables With LCA Annotation For Each OTU
Open OTU Table
Take the Transpose of an OTU Table
Plot Hierarchical Taxonomic Tree with Relative Abundance
Open Metadata Table
Sample ITS1 and ITS2 Data
Plot the Geographic Location of Samples
Creates Nodes and Edge-List For An OTU Table
Summarize OTU
Calculate Percent of OTUs Classified at a Given Taxonomic Rank
Plot Temporal Trends for Metadata and Taxon Groups
Plot The Geographic Location of Samples
Plot Of Correlation Coefficient
Select METADATA Variables
Split OTU Tables By Taxonomic Rank
Perform ADONIS Analysis for OTU Tables Or Taxonomic Abundance
Matrix
Lowest Common Ancestor (LCA) OF EACH OTU
Plot OTU Abundance at a Given Rank with Metadata Annotation
Barplot Of Taxa Distribution In Groups
Plot Hierarchical Cluster Of Samples Based on OTU Table or Taxonomic
Abundance Matrix
Taxonomic Rank Formatting
Plot Distribution of OTUs
Calculate Dissimilarity Matrix Data
Plot Distance Matrix Heatmap for OTU Samples
Plot Indicator Taxon Groups for Metadata Trends
Plot Spatial Collection Trends for Taxon Groups
Summarize Diversity Indices for OTU Tables
Customized Themes For GGPLOT
Summary of Shared Taxa Across ALL Subjects
Negative Binomial Test For OTUID or Taxon
Plot a Heatmap Showing OTU Abundance by Taxonomic Classification
Combine Non Overlapped OTU tables From The Same Community
Show Summary of Core Taxa
Summary of Shared OTUs Across ALL Subjects
Reset OTU
Fill Missing Taxonomic Information
Get OTUs Classified at Taxonomic Rank(s)
Boxplot Of Richness For Each Level Of A Given Metadata Variable
Filter OTU