exportDataset

export one of 'SpecAbund', 'SpecAbundAve', 'MSdata' or 'MSMSdata' from an RC object to csv

A feature clustering algorithm for non-targeted mass spectrometric metabolomics data. This method is compatible with gas and liquid chromatography coupled mass spectrometry, including indiscriminant tandem mass spectrometry data <DOI: 10.1021/ac501530d>.

Helge Hecht

RAMClustR

Mass Spectrometry Metabolomics Feature Clustering and
Interpretation

Corey D. Broeckling

Fayyaz Afsar

Steffen Neumann

Asa Ben-Hur

Jessica Prenni

Matej Trojak

Zargham Ahmad

exportDataset function

<dl><dt>ramclustObj</dt>
<dd>ramclustR object to export from</dd>
<dt>which.data</dt>
<dd>name of dataset to export. SpecAbund, SpecAbundAve, MSdata, or MSMSdata</dd>
<dt>label.by</dt>
<dd>either 'ann' or 'cmpd', generally. name of ramclustObj slot used as csv header for each column (compound)</dd>
<dt>appendFactors</dt>
<dd>logical. If TRUE (default) the factor data frame is appended to the left side of the dataset.</dd></dl>

Arguments

Author

exportDataset — exportDataset

<dl>

<dt>ramclustObj</dt>
<dd>ramclustR object to export from</dd>


<dt>which.data</dt>
<dd>name of dataset to export. SpecAbund, SpecAbundAve, MSdata, or MSMSdata</dd>


<dt>label.by</dt>
<dd>either 'ann' or 'cmpd', generally. name of ramclustObj slot used as csv header for each column (compound)</dd>


<dt>appendFactors</dt>
<dd>logical. If TRUE (default) the factor data frame is appended to the left side of the dataset.</dd>

</dl>

exportDataset: exportDataset

Description

Usage

Value

Arguments

Author

Details

References