import.sirius

After running Sirius on .ms files, import the annotation results

A feature clustering algorithm for non-targeted mass spectrometric metabolomics data. This method is compatible with gas and liquid chromatography coupled mass spectrometry, including indiscriminant tandem mass spectrometry data <DOI: 10.1021/ac501530d>.

Helge Hecht

RAMClustR

Mass Spectrometry Metabolomics Feature Clustering and
Interpretation

Corey D. Broeckling

Fayyaz Afsar

Steffen Neumann

Asa Ben-Hur

Jessica Prenni

Matej Trojak

Zargham Ahmad

import.sirius function

<dl><dt>ramclustObj</dt>
<dd>R object - the ramclustR object which was used to write the .mat or .msp files</dd>
<dt>ms.dir</dt>
<dd>optional path to .mat directory. default = "spectra/ms/out" subdirectory in working directory</dd>
<dt>ion.mode</dt>
<dd>specify either "N" for negative ionization mode or "P" for positive ionization mode</dd></dl>

Arguments

Author

import.sirius — import.sirius

<dl>

<dt>ramclustObj</dt>
<dd>R object - the ramclustR object which was used to write the .mat or .msp files</dd>


<dt>ms.dir</dt>
<dd>optional path to .mat directory. default = "spectra/ms/out" subdirectory in working directory</dd>


<dt>ion.mode</dt>
<dd>specify either "N" for negative ionization mode or "P" for positive ionization mode</dd>

</dl>

import.sirius: import.sirius

Description

Usage

Value

Arguments

Author

Details

References