RCSL (version 0.99.95)

RCSL: Perform the RCSL program

Description

Perform the RCSL program

Usage

RCSL(
  data,
  GF = TRUE,
  gfRatio = 0.025,
  pcRatio = 0.95,
  NN.method = "KNN",
  Dis.method = "Euclidean",
  neiRatio = 0.65
)

Arguments

data

normalizaed gene expression matrix(each column represents a cell)

GF

should I need the gene filter step?

gfRatio

the ratio of the gene filter

pcRatio

the ratio between the variance of the

NN.method

the method of finding neighbors

Dis.method

the distance metric in finding neighbors

neiRatio

ratio of the number of selected

Value

gfData gene expression matrix after genes filtering

B block-diagonal matrix

C estimated number of clusters

y clustering results

Examples

# NOT RUN {
data <- log2(yan[1:100,1:15]+1)
RCSL(data)
# }