RCircos.Chromosome.Ideogram.Plot
Plot Chromosome Ideogram
RCircos.Customized.Shape.Plot
Plot A Customized Shape
Circos-like Plot of Genomic Data
Convert A Genomic Position to An Index of Circos Plot Position
RCircos.Adjust.Scatter.Values
Adjust Scatter Plot Data to Fit the Data Track
Erase One or More Data Tracks
Highlight PLot Area Cross One or More Tracks
Paint Areas on One Data Track
Erase Zoom-in Plot Area
RCircos.Customized.Connection.Plot
Draw Connectors between Chromosome Ideogram and Gene Names
Get Default Coordinates for An Arrow Shape
Sample Data for Gene Labels
RCircos.Get.Data.Point.Height
Calculate the Height of Data in A Track
RCircos.Get.Core.Components
Methods to Retrieve RCircos Core Components Used in Current RCircos Session
RCircos.Get.Plot.Boundary
Calculate Boundary of A Data Track
RCircos Environment
RCircos.Gene.Connector.Plot
Draw Connectors between Chromosome Ideogram and Gene Names
Assign Plot Colors for Non-Link Data Plot
RCircos.Get.Gene.Label.Locations
Calculate Plot Positions for Gene Labels
Get the Layer Numbers for Tile Plot
RCircos.Get.Paired.Points.Positions
Calcualte Plot Positions for A Genomic Interval
RCircos.Get.Default.Parameters
Retrieve Parameter Values Stored in RCircos Environment
Set up Colors for Link Lines or Ribbons
RCircos.Get.Single.Point.Positions
Calculate Plot Positions for Genomic Data
RCircos.Get.Polygon.Height
Calculate the Height of Polygons in A Data Track
RCircos.Get.Chromosome.Order
Find the order of Chromosome Names
Sample Data for RCircos Line Plot
RCircos.Get.Start.End.Locations
Calculate Start and End Positions for Plot Data
RCircos.Get.Heatmap.Color.Scale
Generate Color Scales for Heatmap Plot
Draw Lines for One Data Track
Sample Data for RCircos Histogram Plot
Draw Heatmap for One Data Track
Sample Data for RCircos Tile Plot
Retriev Subset of Plot Data for Zoom
RCircos.Get.Track.Positions
Calculate Plot Positions for A Data Track
RCircos.Reset.Core.Components
Reset Methods for Modifying RCircos Core Components
Calculate x and y Coordinates for a Bezire Curve
Sample Data for RCircos Link Plot
Sample Data of Rat Gene Expression
Plot Tiles for One Data Track
RCircos.Get.Heatmap.Data.Colors
Set Colors for One Track of Heatmap
RCircos.Set.Base.Plot.Positions
Setup Base Plot Positions
RCircos.Set.Core.Components
Initialize Core Components for RCircos Plot
Default Character Size of RCircos Plot
RCircos.Zoom.Area.Outline
Draw Outline for Zoom Plot Area
RCircos.Multiple.Species.Core.Components
Setup RCircos Core Components with Multiple Species Genomes
Sample Data of Mouse Gene Expression
Draw Gene Names on a Data Track
Draw Ribbon between Two Genomic Regions
Sample Data for RCircos Ribbon Plot
Draw Outline for A Data Track
RCircos.Zoom.Paired.Plot.Positions
Calculate Zoomed Index of Circos Plot Positions for Genomic Intervals
Heatmap Colors Supported by Current Version of RCircos
RCircos.Pseudo.Ideogram.From.Labels
Generate A Pseudo Chromosome Ideogram from List of Lables
RCircos.Pseudo.Ideogram.From.Table
Generate Pseudo Chromosome Ideogram from Plot Data Table
RCircos.Sort.Genomic.Data
Sort Genomic or Ideogram Data
RCircos.Validate.Genomic.Data
Validate Genomic Data
RCircos.Set.Zoom.Plot.Positions
Set Position for Zoom-in Plot
RCircos.Get.Heatmap.Color.Scale.Location
Calculate X and Y Coordinates for Color Scale
RCircos.Get.Gene.Name.Plot.Parameters
Calculate Parameters for Gene Name Plot
Retrieve Genomic Interval from Genomic Data for Zoom Plot
Padding Distance Constant between Two Chromosomes
Plot Types Supported by Current RCircos Version
Plot Histogram for One Data Track
RCircos.Initialize.Plot.Parameters
Initialize RCircos Plot Parameters
RCircos.Multiple.Species.Dataset
Combine Multiple Data Sets form Different Genomes
RCircos.defaultBasePerUnits
The Default Base Pair Number of A Circos Unit
RCircos.Validate.Genomic.Info
Validate Genomic Information
Default Character With in Circos Unit
RCircos.Zoom.Single.Plot.Positions
Calculate Zoomed Index of Circos Plot Positions for Single Point Genomic Data
RCircos.Validate.Cyto.Info
Validate Chromosome Ideogram Information
RCircos.ZoomIn.Chromosome
Zoom in One or Partial Chromosome Ideogram
RCircos.Validate.Track.Positions
Validate Track Positions
UCSC.Mouse.GRCm38.CytoBandIdeogram
Cytoband Inforamtion for Mouse Chromosome Ideogram
RCircos.Validate.Plot.Parameters
Validate Plot Parameters
UCSC.HG38.Human.CytoBandIdeogram
Human Chromosome Ideogram Version 38
RCircos.Parallel.Line.Plot
Draw Lines between Two Genomic Positions on Same Chromosome
RCircos.Plot.Heatmap.Color.Scale
Plot A Color Scale for Heatmap
Point Plot for One Data Track
Scater Plot for One Data Track
Sample Data for RCircos Scatter Plot
Sample Data for RCircos Heatmap Plot
Draw Polygons on One Data Track
RCircos.List.Plot.Parameters
List RCircos Plot Parameters
Draw Link Lines between Two or More Genomic Positions
RCircos Polygon Demo Data
RCircos.Set.Cytoband.Data
Set Chromosome Cytoband Data for Circos Plot
RCircos.ZoomOut.Chromosome
Zoom out Chromosome Ideogram
Setup Plot Area for RCircos Plot
UCSC.Baylor.3.4.Rat.cytoBandIdeogram
Cytoband Information for Rat Chromosome Ideogram
RCircos.Vertical.Line.Plot
Draw Vertical Lines on One Data Track
Zoomed-in Plot of Small Genomic Region
A Simple RCircos Plot Workflow
UCSC.HG19.Human.CytoBandIdeogram
Cytoband Information for Human Chromosome Ideogram
RCircos.defaultCircosUnits
Default Circos Units for RCircos
RCircos.defaultChromPadding
The Default Value of GAP in Circos (Chromosome) Unit between two Chromosome Ideogram