RClone is a R package gathering all the functions of GenClone program to handle data (haploid and diploid) with clones.
| Package: | RClone |
| Type: | Package |
| Title: | GenClone |
| Version: | 1.0 |
| Date: | 2015-07-31 |
| License: | GPL (>=2.0) |
| LazyLoad: | yes |
This package contains several types of functions:
import/export functions to handle data from GenClone (see transcript_GC)
and Adegenet and export RClone data for Genetix and Arlequin (for example see export_genclone_genetix),
functions to help defining MLL (MultiLocus Lineage) as psex and genet_dist,
descriptive functions to compute genotypic richness and diversity: clonal_index, genclone and Pareto_index,
functions for spatial analyses of clonal structure (see for example autocorrelation).
Review: "Standardizing methods to address clonality in population studies" 2007, Molecular Ecology, S. Arnaud-Haond, C.M. Duarte, F. Alberto and E.A. Serrao