Usage
MLL_generator(data1, haploid = FALSE, vecpop = NULL, manh = FALSE, manh_w = FALSE,
alpha1 = NULL, alpha2 = NULL)
MLL_generator2(potential_clones = NULL, res_mlg = NULL, vecpop = NULL)
Arguments
data1
a Rclone table with one allele per column.
haploid
logical, option, haploid indicates the ploidy level of data1.
vecpop
vector, option, vecpop indicates the population name of each unit
of data1, if data1 contains several populations.
If data1 contains only one population, leave vecpop =
manh
option, if TRUE, computes genetic distances among MLG in terms of
divergence of microsatellites motifs (Rozenfeld et al., 2007).
manh_w
option, if TRUE, computes genetic distances among MLG in terms of
weighted divergence of microsatellites motifs (Rozenfeld et al., 2007).
alpha1
numeric, option, if alpha1 is not NULL, a vertical significativity
line is added on graph at alpha1
alpha2
numeric, option, if alpha2 is not NULL, a vertical significativity
line is added on graph at alpha2.
potential_clones
table, a result table from genet_dist named potential_clones.
res_mlg
list, a list of MLG, result from MLG_list.