RClone (version 1.0)

RClone-package: RClone

Description

RClone is a R package gathering all the functions of GenClone program to handle data (haploid and diploid) with clones.

Details

ll{ Package: RClone Type: Package Title: GenClone Version: 1.0 Date: 2015-07-31 License: GPL (>=2.0) LazyLoad: yes } This package contains several types of functions:

• import/export functions to handle data from GenClone (seetranscript_GC) and Adegenet and exportRClonedata for Genetix and Arlequin (for example seeexport_genclone_genetix),
• functions to help defining MLL (MultiLocus Lineage) aspsexandgenet_dist,
• descriptive functions to compute genotypic richness and diversity:clonal_index,gencloneandPareto_index,
• functions for spatial analyses of clonal structure (see for exampleautocorrelation).

References

Review: "Standardizing methods to address clonality in population studies" 2007, Molecular Ecology, S. Arnaud-Haond, C.M. Duarte, F. Alberto and E.A. Serrao