cytobandLocations

idiocolors

This data set contains the genomic locations of cytobands based on
 both the latest build of the human genome (GRch38) and the latest
 update to the International Standard for human Cytogenomic
 Nomenclature (ISCN). Note that the CRch38 locations are unchanged from
 build GRch37 (hg19).

datasets

Defines classes and methods to process text-based
cytogenetics using the CytoGPS web site, then import the results
into R for further analysis and graphing.

Kevin Coombes

RCytoGPS

Using Cytogenetics Data in R

Dwayne Tally

cytobandLocations function

A data matrix (<code>cytobandLocations</code>) containing 868 rows and
 5 columns. Each row contains one of the cytobands defined in the 2016
 update to ISCN nomenclature. The rownames are the standard cytoband
 names; for example, <code>1p36.33</code>. The columns are<dl>
 <dt>Chromosome</dt>
<dd>The name of the human chromosome, stored as
 <code>chr#</code>.</dd> <dt><code>loc.start</code></dt>
<dd>The starting base position of the band.</dd> <dt><code>loc.end</code></dt>
<dd>The ending base position of the band.</dd> <dt><code>Band</code></dt>
<dd>The band name without the chromosome; for
 example, <code>p36.33</code>.</dd> <dt><code>Stain</code></dt>
<dd>A factor containing the name of the Giemsa-stain
 color of the band in a karyotype image.</dd> 
</dl>Also, a vector (<code>idiocolors</code>) of length eight that translates the
 Giemsa stain names into appropriate colors.

Format

Kevin R. Coombes <a href="/link/krc%40silicovore.com?package=RCytoGPS&version=1.2.10" data-mini-rdoc="RCytoGPS::krc@silicovore.com">krc@silicovore.com</a>,
 Dwayne G. Tally <a href="/link/dtally110%40hotmail.com?package=RCytoGPS&version=1.2.10" data-mini-rdoc="RCytoGPS::dtally110@hotmail.com">dtally110@hotmail.com</a>

Author

Cytoband Locations — cytobandLocations

A data matrix (<code>cytobandLocations</code>) containing 868 rows and
 5 columns. Each row contains one of the cytobands defined in the 2016
 update to ISCN nomenclature. The rownames are the standard cytoband
 names; for example, <code>1p36.33</code>. The columns are<dl>
 <dt>Chromosome</dt>
<dd>The name of the human chromosome, stored as
 <code>chr#</code>.</dd>

 <dt><code>loc.start</code></dt>
<dd>The starting base position of the band.</dd>

 <dt><code>loc.end</code></dt>
<dd>The ending base position of the band.</dd>

 <dt><code>Band</code></dt>
<dd>The band name without the chromosome; for
 example, <code>p36.33</code>.</dd>

 <dt><code>Stain</code></dt>
<dd>A factor containing the name of the Giemsa-stain
 color of the band in a karyotype image.</dd>

 
</dl>Also, a vector (<code>idiocolors</code>) of length eight that translates the
 Giemsa stain names into appropriate colors.

Kevin R. Coombes <a href='mailto:krc@silicovore.com'>krc@silicovore.com</a>,
 Dwayne G. Tally <a href='mailto:dtally110@hotmail.com'>dtally110@hotmail.com</a>

cytobandLocations: Cytoband Locations

Description

Usage

Arguments

Format

Author

References