RCytoscape (version 1.22.0)

createWindowFromSelection: createWindowFromSelection

Description

All selected nodes, their connecting edges, and associated attributes are copied into a new CytoscapeWindow, with the supplied title.

Usage

createWindowFromSelection(obj, new.windowTitle, return.graph)

Arguments

obj

a CytoscapeWindowClass object.

new.windowTitle

a String.

return.graph

an logical object.

Value

A new CytoscapeWindow object, with the graph slot populated with the new selected subgraph, if requested. If not requested, the graph slot holds an empty graph.

See Also

selectNodes

Examples

  cy <- CytoscapeConnection ()
  title <- 'createWindowFromSelection demo'

  cw <-  new.CytoscapeWindow (title, makeSimpleGraph ())
  displayGraph (cw)
  redraw (cw)
  layoutNetwork(cw)
  selectNodes (cw, c ('A', 'C'))
 
  new.window.title <- 'NEW WINDOW'
  if (new.window.title %in% as.character (getWindowList (cy)))
    deleteWindow (cy, new.window.title)

  c2 <- createWindowFromSelection (cw, new.window.title, TRUE)
  redraw (c2)
  layoutNetwork(c2)

  clearSelection (c2)
  selectNodes (c2, 'C')
  print (getSelectedNodeCount (c2))  # should be 1