Learn R Programming
⚠️There's a newer version (1.10.0) of this package.Take me there.

RDAVIDWebService (version 1.6.0)

An R Package for retrieving data from DAVID into R objects using Web Services API.

Description

Tools for retrieving data from the Database for Annotation, Visualization and Integrated Discovery (DAVID) using Web Services into R objects. This package offers the main functionalities of DAVID website including: i) user friendly connectivity to upload gene/background list/s, change gene/background position, select current specie/s, select annotations, etc. ii) Reports of the submitted Gene List, Annotation Category Summary, Gene/Term Clusters, Functional Annotation Chart, Functional Annotation Table

Copy Link

Version

Version

1.6.0

License

GPL (>=2)

Maintainer

Cristobal Fresno

Last Published

February 15th, 2017

Functions in RDAVIDWebService (1.6.0)

is.connected

Methods to manipulate DAVID website
DAVIDWebService-package

An R Package for retrieving data from DAVID into R objects using Web Services
getGeneCategoriesReport

Obtain DAVID website reports
summary

Basic summary for DAVIDWebService package classes.
DAVIDCluster-class

class "DAVIDCluster
subset

Methods for DAVIDFunctionalAnnotationTable class object
DAVIDFunctionalAnnotationTable-class

class "DAVIDFunctionalAnnotationTable
categories

categories for the different DAVIDWebService package class objects
DAVIDGenes

High level constructors for DAVIDWebService package's classes.
geneCluster1

DAVID's website gene/term cluster report example files
annotationTable1

DAVID's website functional annotation table example files
species

Methods for DAVIDGenes class object
DAVIDGODag-class

class "DAVIDGODag
plot2D

Visualization of biological relationships
show

Basic console output
DAVIDFunctionalAnnotationChart-class

class "DAVIDFunctionalAnnotationChart
demoList1

DAVID's website demoList1 example id files
DAVIDResult-class

class "DAVIDResult
terms

Methods for DAVIDGODag class object
genes

genes for the different DAVIDWebService package class objects.
ids

ids for the different DAVIDWebService package class objects
funChart1

DAVID's website Functional Annotation Chart example files
geneList1

DAVID's website gene list example files
setEmail

Accessor methods for DAVIDWebService class
DAVIDWebService-class

Main class to connect to DAVID Web Service
cluster

Methods for DAVIDCluster class object
DAVIDGeneCluster-class

class "DAVIDGeneCluster
DAVIDGenes-class

class "DAVIDGenes
annotationSummary1

DAVID's website annotation summary example files
type

Getters for DAVIDResult object
DAVIDTermCluster-class

class "DAVIDTermCluster