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RDAVIDWebService (version 1.8.0)

An R Package for retrieving data from DAVID into R objects using Web Services API.

Description

Tools for retrieving data from the Database for Annotation, Visualization and Integrated Discovery (DAVID) using Web Services into R objects. This package offers the main functionalities of DAVID website including: i) user friendly connectivity to upload gene/background list/s, change gene/background position, select current specie/s, select annotations, etc. ii) Reports of the submitted Gene List, Annotation Category Summary, Gene/Term Clusters, Functional Annotation Chart, Functional Annotation Table

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Version

Version

1.8.0

License

GPL (>=2)

Maintainer

Cristobal Fresno

Last Published

February 15th, 2017

Functions in RDAVIDWebService (1.8.0)

show

Basic console output
DAVIDGenes

High level constructors for DAVIDWebService package's classes.
summary

Basic summary for DAVIDWebService package classes.
cluster

Methods for DAVIDCluster class object
annotationSummary1

DAVID's website annotation summary example files
genes

genes for the different DAVIDWebService package class objects.
plot2D

Visualization of biological relationships
DAVIDCluster-class

class "DAVIDCluster
categories

categories for the different DAVIDWebService package class objects
ids

ids for the different DAVIDWebService package class objects
DAVIDGenes-class

class "DAVIDGenes
geneCluster1

DAVID's website gene/term cluster report example files
demoList1

DAVID's website demoList1 example id files
DAVIDGeneCluster-class

class "DAVIDGeneCluster
DAVIDFunctionalAnnotationTable-class

class "DAVIDFunctionalAnnotationTable
annotationTable1

DAVID's website functional annotation table example files
subset

Methods for DAVIDFunctionalAnnotationTable class object
DAVIDFunctionalAnnotationChart-class

class "DAVIDFunctionalAnnotationChart
funChart1

DAVID's website Functional Annotation Chart example files
geneList1

DAVID's website gene list example files
terms

Methods for DAVIDGODag class object
DAVIDResult-class

class "DAVIDResult
setEmail

Accessor methods for DAVIDWebService class
getGeneCategoriesReport

Obtain DAVID website reports
DAVIDWebService-class

Main class to connect to DAVID Web Service
species

Methods for DAVIDGenes class object
DAVIDGODag-class

class "DAVIDGODag
type

Getters for DAVIDResult object
DAVIDTermCluster-class

class "DAVIDTermCluster
is.connected

Methods to manipulate DAVID website
DAVIDWebService-package

An R Package for retrieving data from DAVID into R objects using Web Services