stepType

Inherits: <a rd-options="" href="/link/rdmlBaseType?package=RDML&version=0.9-8" data-mini-rdoc="RDML::rdmlBaseType">rdmlBaseType</a>.

datasets

Imports real-time thermo cycler (qPCR) data from Real-time PCR
Data Markup Language (RDML) and transforms to the appropriate formats of
the 'qpcR' and 'chipPCR' packages. Contains a dendrogram visualization
for the structure of RDML object and GUI for RDML editing.

Konstantin A Blagodatskikh

RDML

Importing Real-Time Thermo Cycler (qPCR) Data from RDML Format
Files

Konstantin A. Blagodatskikh

Stefan Roediger

Michal Burdukiewicz

Andrej-Nikolai Spiess

stepType function

An <code><a rd-options="" href="/link/R6Class?package=RDML&version=0.9-8" data-mini-rdoc="RDML::R6Class">R6Class</a></code> generator object.

Format

<pre>stepType$new(nr, description = NULL,
 temperature = NULL, gradient = NULL, loop = NULL, pause = NULL, lidOpen =
 NULL)</pre>

Initialization

<dl class="dl-horizontal">
<dt><code>nr</code></dt><dd><a rd-options="checkmate" href="/link/checkCount?package=RDML&version=0.9-8&to=checkmate" data-mini-rdoc="checkmate::checkCount">checkCount</a>. The
 incremental number of the step. First step should have value 1. The increment
 between steps should be constant and equivalent to 1.</dd>
 <dt><code>description</code></dt><dd><a rd-options="checkmate" href="/link/checkString?package=RDML&version=0.9-8&to=checkmate" data-mini-rdoc="checkmate::checkString">checkString</a>.</dd>
 <dt><code>temperature</code></dt><dd><a rd-options="" href="/link/temperatureType?package=RDML&version=0.9-8" data-mini-rdoc="RDML::temperatureType">temperatureType</a>.</dd>
 <dt><code>gradient</code></dt><dd><a rd-options="" href="/link/gradientType?package=RDML&version=0.9-8" data-mini-rdoc="RDML::gradientType">gradientType</a>.</dd>
 <dt><code>loop</code></dt><dd><a rd-options="" href="/link/loopType?package=RDML&version=0.9-8" data-mini-rdoc="RDML::loopType">loopType</a>.</dd> <dt><code>pause</code></dt><dd><a rd-options="" href="/link/pauseType?package=RDML&version=0.9-8" data-mini-rdoc="RDML::pauseType">pauseType</a>.</dd>
 <dt><code>lidOpen</code></dt><dd><a rd-options="" href="/link/lidOpenType?package=RDML&version=0.9-8" data-mini-rdoc="RDML::lidOpenType">lidOpenType</a>.</dd>
 </dl>

Fields

Inherits: <a rd-options='' href='rdmlBaseType'>rdmlBaseType</a>.

stepType R6 class. — stepType

An <code><a rd-options='' href='R6Class'>R6Class</a></code> generator object.

<dl class='dl-horizontal'>
<dt><code>nr</code></dt><dd><a rd-options='checkmate' href='checkCount'>checkCount</a>. The
 incremental number of the step. First step should have value 1. The increment
 between steps should be constant and equivalent to 1.</dd>
 <dt><code>description</code></dt><dd><a rd-options='checkmate' href='checkString'>checkString</a>.</dd>
 <dt><code>temperature</code></dt><dd><a rd-options='' href='temperatureType'>temperatureType</a>.</dd>
 <dt><code>gradient</code></dt><dd><a rd-options='' href='gradientType'>gradientType</a>.</dd>
 <dt><code>loop</code></dt><dd><a rd-options='' href='loopType'>loopType</a>.</dd> <dt><code>pause</code></dt><dd><a rd-options='' href='pauseType'>pauseType</a>.</dd>
 <dt><code>lidOpen</code></dt><dd><a rd-options='' href='lidOpenType'>lidOpenType</a>.</dd>
 </dl>

stepType: stepType R6 class.

Description

Usage

Arguments

Format

Initialization

Fields