REDseq (version 1.18.0)

distanceHistSeq2RE: Plot the distance distribution from sequence to the associated RE sites

Description

Give an overview of the distance distribution from all assigned sequences to the associated RE sites. If average or estimate is used for assigning sequences to RE sites, the count for histogram drawing will be adjusted with the weight assigned.

Usage

distanceHistSeq2RE(assignedSeqs, longestDist = 1000, 
title = "histogram of distance to assigned RE site", 
xlab = "Distance to assigned RE site", ylab = "Frequency", ylim="")

Arguments

assignedSeqs

result returned from assignSeq2REsite

longestDist

longest distance to keep in the plot

title

an overall title for the plot

xlab

a title for the x axis

ylab

a title for the y axis

ylim

range of y to be plotted

See Also

assignSeq2REsite, distanceHistSeq2RE

Examples

library(REDseq)
data(example.assignedREDseq)
distanceHistSeq2RE(example.assignedREDseq,ylim=c(0,20))