REIDS (version 0.1.0)

ExpressionLevelPlot: "ExpressionLevelPlot"

Description

The ExpressionLevelPlot produces a plot of the expression levels of a specific exon and its corresponding gene.

Usage

ExpressionLevelPlot(GeneID = NULL, ExonID = NULL, Data,
  GeneLevelData = NULL, ExonLevelData = NULL, Groups, ylabel = NULL,
  title = "")

Arguments

GeneID

The gene ID of the gene of interest.

ExonID

The exon ID of the exon of interest.

Data

The processed data as returned by DataProcessing. This is were the observed probe intensities will be retrieved.

GeneLevelData

The gene level summarized data to retrieve the gene level values.

ExonLevelData

The exon level summarized data to retrieve the exon level values.

Groups

The groups of interest in the data.

ylabel

The label for the y-axis.

title

A title for the plot.

Examples

# NOT RUN {
data(TC12000010)
data(TC12000010_ExonLevel)
data(TC12000010_GeneLevel)
ExpressionLevelPlot(GeneID="TC12000010",ExonID="PSR12000150",
Data=TC12000010,GeneLevelData=TC12000010_GeneLevel,ExonLevelData
=TC12000010_ExonLevel,Groups=list(c(1:9),c(10:18)),ylabel="",
title="PSR12000150")
# }