REIDS (version 0.1.0)

REMAP_SplitProbeSets: "REMAP_SplitProbeSets"

Description

The REMAP_SplitProbeSets function converts the original data frame to a data frame based on the retrieved REMAP annotation.

Usage

REMAP_SplitProbeSets(Data, REMAPSplitFile, NotAnnotated = FALSE,
  Location = NULL, Name = "REMAP")

Arguments

Data

The data frame to be transformed.

REMAPSplitFile

The name of the file with the REMAP information regarding the split of the probe sets if the TC ID is annotated to mutiple genes.

NotAnnotated

Logical. Should the probe sets which are not annotated to a gene still be included? If FALSE, these are excluded. If TRUE, these are included. Default is FALSE.

Location

The location where the file should be saved. If NULL, the object is returned to the user. Otherwise, a file with the specified name is created.

Name

The name of the output file. Defaults to "REMAP".

Value

A data frame with similar information as the data frame specified in Data with an altered gene ID (first) column in order to match the REMAP annotation.

Examples

# NOT RUN {
data(TC1500264)

REMAPTest=REMAP_SplitProbeSets(Data=TC1500264,REMAPSplitFile=
"TC1500264_Gene_Split.txt")
# }