REIDS (version 0.1.0)

TranscriptsPlot: "TranscriptsPlot "

Description

The TranscriptsPlot function plots the known Ensemble transcript isoform composition plots.

Usage

TranscriptsPlot(trans, positions, transcriptinfo, display.probesets = TRUE,
  Data, Groups = list(), Start = NULL, Stop = NULL, Highlight = NULL)

Arguments

trans

The TC ID of the transcript to be plotted.

positions

A table with the start and stop positions of the probe sets.

transcriptinfo

A table with the transcript information of the TC ID.

display.probesets

Logical. Should the probe sets be shown?

Data

The exon level summarized data.

Groups

A list with the groups (columns) of interest in the data.

Start

Specify a specific start point on in the genome.

Stop

Specify a specific stop point on in the genome.

Highlight

A character string specifying a probe set to be highlighted in the transcript composition.

Examples

# NOT RUN {
data(positions_36)
data(transcript.clusters.NetAffx.36)
data(TC12000010_ExonLevel)
TranscriptsPlot(trans="TC12000010", display.probesets = TRUE,Data=TC12000010_ExonLevel,
Groups=list(c(10:18),c(19:27)),Start=NULL,Stop=NULL,Highlight="PSR12000150")
# }