reptile_predict_one_mode


    An object of class <code>randomForest</code> or <code>glm</code> when
    <code>family</code> is set to be "Logistic".
  

reptile_classifier


    data.frame instance from read_epigenomic_data, which containing
    intensity and intensity deviation values of each mark for each query
    region    
  

epimark


    classifier family used in the enhancer model
    
    Default: RandomForest
    
    Classifiers available:
    
    - RandomForest: random forest<p></p><p>    - Logistic: logistic regression
  </p>

family


  Internal function used to predict the enhancer activity of either DMRs
  or query regions.


Predicting regulatory DNA elements based on epigenomic signatures. This package is more of a set of building blocks than a direct solution. REPTILE regulatory prediction pipeline is built on this R package. See <https://github.com/yupenghe/REPTILE> for more information.

Yupeng He

REPTILE

Regulatory DNA Element Prediction

reptile_predict_one_mode function


    classifier family used in the enhancer model
    
    Default: RandomForest
    
    Classifiers available:
    
    - RandomForest: random forest

    - Logistic: logistic regression
  

reptile_predict_one_mode: Internal - predicting enhancer activity of DMRs or query regions

Description

Usage

Arguments

Value

See Also