Learn R Programming

RESET (version 1.0.0)

Reconstruction Set Test

Description

Contains logic for sample-level variable set scoring using randomized reduced rank reconstruction error. Frost, H. Robert (2023) "Reconstruction Set Test (RESET): a computationally efficient method for single sample gene set testing based on randomized reduced rank reconstruction error" .

Copy Link

Version

Install

install.packages('RESET')

Monthly Downloads

189

Version

1.0.0

License

GPL (>= 2)

Maintainer

H Robert Frost

Last Published

March 6th, 2024

Functions in RESET (1.0.0)

convertToPerVarScores

Utility function to that converts RESET scores to/from per-variable scores
resetViaPCA

Reconstruction Set Test (RESET) via PCA
randomColumnSpace

Implementation of a sparse powered randomized algorithm for computing a basis for the column space of a matrix.
convertToPerVarScoresForSeurat

Utility function to that converts RESET scores contained in a Seurat object to/from per-variable scores
createVarSetCollection

Utility function to help create a variable set collection list object
RESET-package

Reconstruction Set Test
resetForSeurat

RESET wrapper for scRNA-seq data processed using the Seurat framework
randomSVD

Implementation of a sparse powered randomized singular value decomposition.
reset

Reconstruction Set Test (RESET)