smoking

A dataset containing normalized transcript measurements for 51 subjects and 22283 transcripts.
See Spira et al (2004). "Gene Expression Profiling of Human Lung Tissue from Smokers with Severe Emphysema",
Am J Respir Cell Mol Biol.

datasets

Data for the vignette and examples in 'RFlocalfdr'. Contains a dataset of 1103547 importance values,
and the table of variables used in the random forest splits. The data is Chromosome 22 taken from Auton et al.
(2015) <doi:10.1038/nature15393>. It also contains a 51 samples by 22283 genes data set taken from
Spira et al. (2004) <doi:10.1165/rcmb.2004-0273OC>.

Robert Dunne

RFlocalfdr.data

Data for the Vignette and Examples in 'RFlocalfdr'

smoking function

A list with rma (the transcript data) and y (the class labels):<dl>
<dt>rma</dt>
<dd>51 by 22283, log2 real values</dd><dt>y</dt>
<dd>a character vector, "smoking" and "never-smoked"</dd>...</dl>

Format

Effects of cigarette smoke on the human airway epithelial cell transcriptome — smoking

A list with rma (the transcript data) and y (the class labels):<dl>
<dt>rma</dt>
<dd>51 by 22283, log2 real values</dd>

<dt>y</dt>
<dd>a character vector, "smoking" and "never-smoked"</dd>

...

</dl>

smoking: Effects of cigarette smoke on the human airway epithelial cell transcriptome

Description

Usage

Arguments

Format